Show Genes

GeneSet BIOCARTA_TID_PATHWAY (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters

Cluster	log(P)	Qvalue	Observed in Background	Observed in Cluster	Expected in Cluster
o++a	-4.4	0.01271	10.0	4.0	0.46

Gene expression pattern

Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).

List of genes

Ensembl ID	Name	Cluster
ENSG00000103423	DNAJA3	NonAssociatedWithProgression
ENSG00000204389	HSPA1A	o--b
ENSG00000027697	IFNGR1	NonAssociatedWithProgression
ENSG00000159128	IFNGR2	o++a
ENSG00000104365	IKBKB	o++a
ENSG00000096968	JAK2	o++a
ENSG00000109320	NFKB1	o++a
ENSG00000100906	NFKBIA	o-o
ENSG00000139687	RB1	NonAssociatedWithProgression
ENSG00000173039	RELA	o--a
ENSG00000213977	TAX1BP3	---
ENSG00000067182	TNFRSF1A	NonAssociatedWithProgression
ENSG00000141510	TP53	o--a
ENSG00000184937	WT1	---