PEACHi
GeneSet EXTRACELLULAR_REGION (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -2.6 0.04052 62.0 15.0 7.59
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000148926 ADM +oo
ENSG00000164252 AGGF1 +o+
ENSG00000085662 AKR1B1 ---
ENSG00000104899 AMH ---
ENSG00000214274 ANG o++b
ENSG00000167772 ANGPTL4 NonAssociatedWithProgression
ENSG00000105290 APLP1 oo+
ENSG00000163382 APOA1BP o--a
ENSG00000142192 APP o++b
ENSG00000125703 ATG4C o++b
ENSG00000088812 ATRN NonAssociatedWithProgression
ENSG00000228300 C19orf24 ---
ENSG00000166278 C2 NonAssociatedWithProgression
ENSG00000106804 C5 NonAssociatedWithProgression
ENSG00000174807 CD248 ---
ENSG00000064886 CHI3L2 -+o
ENSG00000217555 CKLF o++a
ENSG00000204291 COL15A1 +oo
ENSG00000182871 COL18A1 NonAssociatedWithProgression
ENSG00000188153 COL4A5 -oo
ENSG00000114270 COL7A1 NonAssociatedWithProgression
ENSG00000092758 COL9A3 NonAssociatedWithProgression
ENSG00000047457 CP NonAssociatedWithProgression
ENSG00000163734 CXCL3 NonAssociatedWithProgression
ENSG00000183628 DGCR6 --o
ENSG00000213918 DNASE1 ---
ENSG00000151914 DST -+o
ENSG00000172638 EFEMP2 NonAssociatedWithProgression
ENSG00000172889 EGFL7 ---
ENSG00000132205 EMILIN2 o-+
ENSG00000164307 ERAP1 oo+
ENSG00000112851 ERBB2IP NonAssociatedWithProgression
ENSG00000163520 FBLN2 NonAssociatedWithProgression
ENSG00000140092 FBLN5 +o+
ENSG00000179431 FJX1 ---
ENSG00000106692 FKTN NonAssociatedWithProgression
ENSG00000070404 FSTL3 ---
ENSG00000102393 GLA ---
ENSG00000063660 GPC1 ---
ENSG00000113070 HBEGF o++a
ENSG00000143321 HDGF ---
ENSG00000119912 IDE -+o
ENSG00000216490 IFI30 oo+
ENSG00000159110 IFNAR2 -oo
ENSG00000113141 IK o--a
ENSG00000172349 IL16 NonAssociatedWithProgression
ENSG00000137496 IL18BP o++a
ENSG00000111536 IL26 +o+
ENSG00000008517 IL32 ---
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000213398 LCAT ---
ENSG00000116977 LGALS8 o+o
ENSG00000100060 MFNG o--a
ENSG00000240972 MIF o--a
ENSG00000183691 NOG +-o
ENSG00000104805 NUCB1 --o
ENSG00000070081 NUCB2 -+o
ENSG00000009694 ODZ1 o+-
ENSG00000099139 PCSK5 o++a
ENSG00000122194 PLG o+o
ENSG00000131238 PPT1 +-o
ENSG00000197746 PSAP oo-
ENSG00000116260 QSOX1 o-+
ENSG00000111737 RAB35 o--a
ENSG00000169413 RNASE6 NonAssociatedWithProgression
ENSG00000023191 RNH1 o--a
ENSG00000176393 RNPEP o--a
ENSG00000133318 RTN3 o--a
ENSG00000132581 SDF2 NonAssociatedWithProgression
ENSG00000132386 SERPINF1 ---
ENSG00000163069 SGCB NonAssociatedWithProgression
ENSG00000187122 SLIT1 ---
ENSG00000108055 SMC3 NonAssociatedWithProgression
ENSG00000168807 SNTB2 o--b
ENSG00000142168 SOD1 NonAssociatedWithProgression
ENSG00000197912 SPG7 o-o
ENSG00000197471 SPN o--a
ENSG00000122862 SRGN NonAssociatedWithProgression
ENSG00000072274 TFRC o++a
ENSG00000105329 TGFB1 o--a
ENSG00000133112 TPT1 oo-
ENSG00000183520 UTP11L NonAssociatedWithProgression
ENSG00000112715 VEGFA +-o
ENSG00000134684 YARS o--b