PEACHi
GeneSet GACAATC,MIR-219 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
UpRegulated -3.3 0.03423 61.0 28.0 16.5
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000072364 AFF4 NonAssociatedWithProgression
ENSG00000160216 AGPAT3 -o-
ENSG00000170776 AKAP13 o-o
ENSG00000179361 ARID3B NonAssociatedWithProgression
ENSG00000011114 BTBD7 NonAssociatedWithProgression
ENSG00000151893 C10orf46 o--a
ENSG00000148660 CAMK2G o+o
ENSG00000129993 CBFA2T3 NonAssociatedWithProgression
ENSG00000132024 CC2D1A NonAssociatedWithProgression
ENSG00000024862 CCDC28A o++b
ENSG00000135535 CD164 oo-
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000171316 CHD7 o++b
ENSG00000107864 CPEB3 o++b
ENSG00000171604 CXXC5 o+-
ENSG00000071626 DAZAP1 ---
ENSG00000057019 DCBLD2 o++a
ENSG00000172795 DCP2 o-o
ENSG00000116675 DNAJC6 o++a
ENSG00000126767 ELK1 ---
ENSG00000179387 ELMOD2 o++b
ENSG00000113719 ERGIC1 o--a
ENSG00000244405 ETV5 +-o
ENSG00000176853 FAM91A1 o+o
ENSG00000145743 FBXL17 -oo
ENSG00000110429 FBXO3 o+o
ENSG00000157827 FMNL2 o++b
ENSG00000198815 FOXJ3 NonAssociatedWithProgression
ENSG00000140564 FURIN o++a
ENSG00000070610 GBA2 o+o
ENSG00000100226 GTPBP1 o--a
ENSG00000071243 ING3 o--b
ENSG00000186480 INSIG1 +oo
ENSG00000205726 ITSN1 -+o
ENSG00000131149 KIAA0182 o--b
ENSG00000112624 KIAA0240 o++b
ENSG00000054523 KIF1B o++a
ENSG00000068697 LAPTM4A o++b
ENSG00000182541 LIMK2 o--a
ENSG00000123684 LPGAT1 o++b
ENSG00000145012 LPP oo+
ENSG00000186868 MAPT o++a
ENSG00000116604 MEF2D o--b
ENSG00000100060 MFNG o--a
ENSG00000196588 MKL1 ---
ENSG00000099875 MKNK2 o--b
ENSG00000099810 MTAP -o-
ENSG00000084676 NCOA1 NonAssociatedWithProgression
ENSG00000177463 NR2C2 NonAssociatedWithProgression
ENSG00000180530 NRIP1 o++a
ENSG00000122126 OCRL o++a
ENSG00000112419 PHACTR2 o++a
ENSG00000119403 PHF19 NonAssociatedWithProgression
ENSG00000186111 PIP5K1C ---
ENSG00000160199 PKNOX1 o--b
ENSG00000128567 PODXL oo+
ENSG00000173457 PPP1R14B o--a
ENSG00000122707 RECK NonAssociatedWithProgression
ENSG00000127870 RNF6 NonAssociatedWithProgression
ENSG00000198963 RORB NonAssociatedWithProgression
ENSG00000116497 S100PBP +o+
ENSG00000095539 SEMA4G NonAssociatedWithProgression
ENSG00000160691 SHC1 o--a
ENSG00000104154 SLC30A4 -+o
ENSG00000196950 SLC39A10 o--b
ENSG00000065613 SLK NonAssociatedWithProgression
ENSG00000163788 SNRK o-o
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000197283 SYNGAP1 o+o
ENSG00000147526 TACC1 o+o
ENSG00000163513 TGFBR2 +o+
ENSG00000196428 TSC22D2 o+-
ENSG00000177889 UBE2N o--a
ENSG00000159202 UBE2Z o-+
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000159459 UBR1 o++b
ENSG00000179456 ZNF238 o-o
ENSG00000180357 ZNF609 o--b