PEACHi
GeneSet MITOCHONDRIAL_LUMEN (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -4.2 0.0039 29.0 12.0 4.12
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000117054 ACADM o--b
ENSG00000116459 ATP5F1 NonAssociatedWithProgression
ENSG00000248098 BCKDHA o-o
ENSG00000083123 BCKDHB o++a
ENSG00000103507 BCKDK o--a
ENSG00000062485 CS +-o
ENSG00000137992 DBT -o-
ENSG00000103423 DNAJA3 NonAssociatedWithProgression
ENSG00000140374 ETFA NonAssociatedWithProgression
ENSG00000109519 GRPEL1 o--b
ENSG00000158941 KIAA1967 o--a
ENSG00000152428 MARS2 NonAssociatedWithProgression
ENSG00000159111 MRPL10 o--a
ENSG00000183093 MRPL12 ---
ENSG00000214026 MRPL23 ---
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000182154 MRPL41 ---
ENSG00000198015 MRPL42 o--a
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000162910 MRPL55 o--a
ENSG00000048544 MRPS10 -o-
ENSG00000181991 MRPS11 o--a
ENSG00000128626 MRPS12 o--a
ENSG00000116898 MRPS15 o--b
ENSG00000182180 MRPS16 --o
ENSG00000096080 MRPS18A NonAssociatedWithProgression
ENSG00000163319 MRPS18C NonAssociatedWithProgression
ENSG00000175110 MRPS22 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000147586 MRPS28 o+o
ENSG00000061794 MRPS35 o--a
ENSG00000134056 MRPS36 -+o
ENSG00000244005 NFS1 NonAssociatedWithProgression
ENSG00000113580 NR3C1 o--a
ENSG00000102309 PIN4 -+o
ENSG00000107959 PITRM1 NonAssociatedWithProgression
ENSG00000136480 POLG2 NonAssociatedWithProgression
ENSG00000156502 SUPV3L1 o--a
ENSG00000162851 TFB2M NonAssociatedWithProgression
ENSG00000104980 TIMM44 ---