PEACHi
GeneSet MITOCHONDRIAL_PART (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -2.9 0.02592 87.0 8.0 2.67
o--a -3.1 0.01889 87.0 23.0 12.36
DownRegulated -3.9 0.00343 87.0 67.0 51.38
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131269 ABCB7 o-o
ENSG00000197150 ABCB8 o-o
ENSG00000033050 ABCF2 o--a
ENSG00000117054 ACADM o--b
ENSG00000196636 ACN9 o++b
ENSG00000152234 ATP5A1 -o-
ENSG00000110955 ATP5B o--b
ENSG00000165629 ATP5C1 NonAssociatedWithProgression
ENSG00000099624 ATP5D o--a
ENSG00000124172 ATP5E NonAssociatedWithProgression
ENSG00000116459 ATP5F1 NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000154518 ATP5G3 NonAssociatedWithProgression
ENSG00000154723 ATP5J o+o
ENSG00000241837 ATP5O +o+
ENSG00000248098 BCKDHA o-o
ENSG00000083123 BCKDHB o++a
ENSG00000103507 BCKDK o--a
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000074582 BCS1L o-o
ENSG00000144559 C3orf31 NonAssociatedWithProgression
ENSG00000165806 CASP7 o-o
ENSG00000014919 COX15 NonAssociatedWithProgression
ENSG00000163626 COX18 o--b
ENSG00000062485 CS +-o
ENSG00000172115 CYCS o--b
ENSG00000137992 DBT -o-
ENSG00000103423 DNAJA3 NonAssociatedWithProgression
ENSG00000140374 ETFA NonAssociatedWithProgression
ENSG00000214253 FIS1 --o
ENSG00000109519 GRPEL1 o--b
ENSG00000138029 HADHB o-o
ENSG00000115317 HTRA2 o--a
ENSG00000132305 IMMT NonAssociatedWithProgression
ENSG00000158941 KIAA1967 o--a
ENSG00000152428 MARS2 NonAssociatedWithProgression
ENSG00000143384 MCL1 o-o
ENSG00000116688 MFN2 o--b
ENSG00000115204 MPV17 --o
ENSG00000159111 MRPL10 o--a
ENSG00000183093 MRPL12 ---
ENSG00000214026 MRPL23 ---
ENSG00000106591 MRPL32 NonAssociatedWithProgression
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000182154 MRPL41 ---
ENSG00000198015 MRPL42 o--a
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000162910 MRPL55 o--a
ENSG00000048544 MRPS10 -o-
ENSG00000181991 MRPS11 o--a
ENSG00000128626 MRPS12 o--a
ENSG00000116898 MRPS15 o--b
ENSG00000182180 MRPS16 --o
ENSG00000096080 MRPS18A NonAssociatedWithProgression
ENSG00000163319 MRPS18C NonAssociatedWithProgression
ENSG00000175110 MRPS22 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000147586 MRPS28 o+o
ENSG00000061794 MRPS35 o--a
ENSG00000134056 MRPS36 -+o
ENSG00000125459 MSTO1 NonAssociatedWithProgression
ENSG00000128654 MTX2 o++b
ENSG00000125356 NDUFA1 o+o
ENSG00000186010 NDUFA13 o-o
ENSG00000131495 NDUFA2 o--b
ENSG00000184983 NDUFA6 o++b
ENSG00000139180 NDUFA9 o--a
ENSG00000023228 NDUFS1 o+o
ENSG00000158864 NDUFS2 --o
ENSG00000213619 NDUFS3 NonAssociatedWithProgression
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000115286 NDUFS7 ---
ENSG00000110717 NDUFS8 o--a
ENSG00000167792 NDUFV1 --o
ENSG00000244005 NFS1 NonAssociatedWithProgression
ENSG00000112992 NNT -+o
ENSG00000113580 NR3C1 o--a
ENSG00000105953 OGDH ---
ENSG00000198836 OPA1 o-+
ENSG00000155463 OXA1L +o+
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000215021 PHB2 ---
ENSG00000102309 PIN4 -+o
ENSG00000107959 PITRM1 NonAssociatedWithProgression
ENSG00000165688 PMPCA o--a
ENSG00000136480 POLG2 NonAssociatedWithProgression
ENSG00000143224 PPOX +o+
ENSG00000132155 RAF1 NonAssociatedWithProgression
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000140983 RHOT2 o--b
ENSG00000073578 SDHA o-o
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000108528 SLC25A11 ---
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000177542 SLC25A22 NonAssociatedWithProgression
ENSG00000169100 SLC25A6 o-o
ENSG00000156502 SUPV3L1 o--a
ENSG00000148290 SURF1 o--a
ENSG00000162851 TFB2M NonAssociatedWithProgression
ENSG00000134809 TIMM10 o-o
ENSG00000099800 TIMM13 o--a
ENSG00000134375 TIMM17A -oo
ENSG00000126768 TIMM17B --o
ENSG00000138297 TIMM23 o--a
ENSG00000104980 TIMM44 ---
ENSG00000105197 TIMM50 ---
ENSG00000150779 TIMM8B --o
ENSG00000100575 TIMM9 -+o
ENSG00000100216 TOMM22 o--b
ENSG00000025772 TOMM34 o--a
ENSG00000175564 UCP3 NonAssociatedWithProgression
ENSG00000156467 UQCRB o++b
ENSG00000010256 UQCRC1 o--a
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000213585 VDAC1 --o
ENSG00000165637 VDAC2 -o-
ENSG00000078668 VDAC3 -+o