PEACHi
GeneSet RCGCANGCGY_V$NRF1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.6 0.04593 342.0 71.0 48.58
DownRegulated -3.6 0.02372 342.0 232.0 201.96
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000108270 AATF o--b
ENSG00000114770 ABCC5 NonAssociatedWithProgression
ENSG00000161204 ABCF3 o--a
ENSG00000011198 ABHD5 NonAssociatedWithProgression
ENSG00000136754 ABI1 NonAssociatedWithProgression
ENSG00000110881 ACCN2 --o
ENSG00000100813 ACIN1 ---
ENSG00000075624 ACTB o--b
ENSG00000138107 ACTR1A ---
ENSG00000137845 ADAM10 NonAssociatedWithProgression
ENSG00000170776 AKAP13 o-o
ENSG00000105127 AKAP8 NonAssociatedWithProgression
ENSG00000053371 AKR7A2 o-o
ENSG00000204673 AKT1S1 ---
ENSG00000105221 AKT2 o--a
ENSG00000120697 ALG5 o-o
ENSG00000088035 ALG6 NonAssociatedWithProgression
ENSG00000138380 ALS2CR8 o++b
ENSG00000140350 ANP32A o--a
ENSG00000213983 AP1G2 ---
ENSG00000072958 AP1M1 o--b
ENSG00000106367 AP1S1 ---
ENSG00000196961 AP2A1 ---
ENSG00000113108 APBB3 o--b
ENSG00000168374 ARF4 o+o
ENSG00000165527 ARF6 NonAssociatedWithProgression
ENSG00000242247 ARFGAP3 ---
ENSG00000032219 ARID4A o-+
ENSG00000163466 ARPC2 -o-
ENSG00000162704 ARPC5 o--b
ENSG00000141480 ARRB2 ---
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000177981 ASB8 o-+
ENSG00000162174 ASRGL1 NonAssociatedWithProgression
ENSG00000197785 ATAD3A o--a
ENSG00000169136 ATF5 ---
ENSG00000171681 ATF7IP ---
ENSG00000149311 ATM NonAssociatedWithProgression
ENSG00000017260 ATP2C1 oo-
ENSG00000165629 ATP5C1 NonAssociatedWithProgression
ENSG00000099624 ATP5D o--a
ENSG00000135390 ATP5G2 oo-
ENSG00000154518 ATP5G3 NonAssociatedWithProgression
ENSG00000167283 ATP5L NonAssociatedWithProgression
ENSG00000241837 ATP5O +o+
ENSG00000159720 ATP6V0D1 o--a
ENSG00000100554 ATP6V1D NonAssociatedWithProgression
ENSG00000156735 BAG4 ---
ENSG00000172530 BANP +-o
ENSG00000198563 BAT1 o--a
ENSG00000204463 BAT3 ---
ENSG00000204438 BAT4 o--a
ENSG00000107949 BCCIP -+o
ENSG00000248098 BCKDHA o-o
ENSG00000110987 BCL7A -o-
ENSG00000029363 BCLAF1 NonAssociatedWithProgression
ENSG00000196072 BLOC1S2 NonAssociatedWithProgression
ENSG00000204217 BMPR2 NonAssociatedWithProgression
ENSG00000204256 BRD2 o--b
ENSG00000151893 C10orf46 o--a
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000078237 C12orf5 o++b
ENSG00000156411 C14orf2 NonAssociatedWithProgression
ENSG00000119669 C14orf4 NonAssociatedWithProgression
ENSG00000132823 C20orf111 NonAssociatedWithProgression
ENSG00000101247 C20orf7 +oo
ENSG00000160221 C21orf33 ---
ENSG00000160298 C21orf58 NonAssociatedWithProgression
ENSG00000241962 C2orf15 +o+
ENSG00000115649 C2orf24 o--b
ENSG00000137288 C6orf125 o--a
ENSG00000124596 C6orf130 o-o
ENSG00000204564 C6orf136 -+o
ENSG00000146350 C6orf170 o++b
ENSG00000112167 C6orf64 NonAssociatedWithProgression
ENSG00000164970 C9orf25 NonAssociatedWithProgression
ENSG00000156017 C9orf41 NonAssociatedWithProgression
ENSG00000131375 CAPN7 o-o
ENSG00000126247 CAPNS1 o++a
ENSG00000147044 CASK o++b
ENSG00000106144 CASP2 o--a
ENSG00000067955 CBFB o--a
ENSG00000105879 CBLL1 ---
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000060339 CCAR1 o--b
ENSG00000145386 CCNA2 o--b
ENSG00000162063 CCNF o--a
ENSG00000118816 CCNI o--a
ENSG00000173992 CCS NonAssociatedWithProgression
ENSG00000163468 CCT3 NonAssociatedWithProgression
ENSG00000150753 CCT5 o--a
ENSG00000096401 CDC5L NonAssociatedWithProgression
ENSG00000185324 CDK10 o--a
ENSG00000101290 CDS2 +o+
ENSG00000172757 CFL1 o-o
ENSG00000085872 CHERP o-o
ENSG00000099622 CIRBP o--b
ENSG00000217555 CKLF o++a
ENSG00000173207 CKS1B NonAssociatedWithProgression
ENSG00000123975 CKS2 o--a
ENSG00000114859 CLCN2 ---
ENSG00000153132 CLGN oo+
ENSG00000166855 CLPX NonAssociatedWithProgression
ENSG00000100528 CNIH NonAssociatedWithProgression
ENSG00000149970 CNKSR2 -oo
ENSG00000080802 CNOT4 ---
ENSG00000173786 CNP ---
ENSG00000133103 COG6 NonAssociatedWithProgression
ENSG00000132423 COQ3 NonAssociatedWithProgression
ENSG00000241563 CORT NonAssociatedWithProgression
ENSG00000164919 COX6C NonAssociatedWithProgression
ENSG00000115944 COX7A2L ---
ENSG00000214078 CPNE1 o--b
ENSG00000160917 CPSF4 o--b
ENSG00000119878 CRIPT -+o
ENSG00000008405 CRY1 NonAssociatedWithProgression
ENSG00000204435 CSNK2B o--a
ENSG00000101138 CSTF1 o++b
ENSG00000102974 CTCF o--b
ENSG00000174080 CTSF o-+
ENSG00000121966 CXCR4 o--b
ENSG00000114395 CYB561D2 o-o
ENSG00000186104 CYP2R1 NonAssociatedWithProgression
ENSG00000129562 DAD1 -oo
ENSG00000071626 DAZAP1 ---
ENSG00000132912 DCTN4 NonAssociatedWithProgression
ENSG00000175197 DDIT3 +-o
ENSG00000215301 DDX3X oo-
ENSG00000198231 DDX42 o--a
ENSG00000135829 DHX9 +-o
ENSG00000086061 DNAJA1 ---
ENSG00000103423 DNAJA3 NonAssociatedWithProgression
ENSG00000148719 DNAJB12 o--a
ENSG00000128590 DNAJB9 o--b
ENSG00000007923 DNAJC11 o--a
ENSG00000197959 DNM3 o++b
ENSG00000130816 DNMT1 o-o
ENSG00000133884 DPF2 o-o
ENSG00000092964 DPYSL2 NonAssociatedWithProgression
ENSG00000185721 DRG1 NonAssociatedWithProgression
ENSG00000139318 DUSP6 NonAssociatedWithProgression
ENSG00000004975 DVL2 NonAssociatedWithProgression
ENSG00000147155 EBP o--b
ENSG00000074266 EED o--a
ENSG00000171570 EGLN2 NonAssociatedWithProgression
ENSG00000110047 EHD1 ---
ENSG00000173674 EIF1AX ---
ENSG00000144895 EIF2A o+-
ENSG00000070785 EIF2B3 NonAssociatedWithProgression
ENSG00000092847 EIF2C1 -+o
ENSG00000134001 EIF2S1 o--a
ENSG00000125977 EIF2S2 NonAssociatedWithProgression
ENSG00000178982 EIF3K o+o
ENSG00000132507 EIF5A o--a
ENSG00000158417 EIF5B o--b
ENSG00000118402 ELOVL4 +-o
ENSG00000178567 EPM2AIP1 o-+
ENSG00000182944 EWSR1 o--b
ENSG00000130713 EXOSC2 o--b
ENSG00000077348 EXOSC5 o--a
ENSG00000168040 FADD o--b
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000137478 FCHSD2 NonAssociatedWithProgression
ENSG00000135723 FHOD1 -+o
ENSG00000102081 FMR1 o+-
ENSG00000170345 FOS NonAssociatedWithProgression
ENSG00000108592 FTSJ3 NonAssociatedWithProgression
ENSG00000089280 FUS o+-
ENSG00000033170 FUT8 -+o
ENSG00000143458 GABPB2 NonAssociatedWithProgression
ENSG00000159131 GART NonAssociatedWithProgression
ENSG00000139436 GIT2 NonAssociatedWithProgression
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000242616 GNG10 o++b
ENSG00000136935 GOLGA1 o++b
ENSG00000144674 GOLGA4 NonAssociatedWithProgression
ENSG00000047932 GOPC NonAssociatedWithProgression
ENSG00000213420 GPC2 o+-
ENSG00000177885 GRB2 NonAssociatedWithProgression
ENSG00000198873 GRK5 +oo
ENSG00000100983 GSS NonAssociatedWithProgression
ENSG00000197265 GTF2E2 NonAssociatedWithProgression
ENSG00000125651 GTF2F1 o--a
ENSG00000077235 GTF3C1 o--b
ENSG00000115207 GTF3C2 NonAssociatedWithProgression
ENSG00000148634 HERC4 o++a
ENSG00000169567 HINT1 NonAssociatedWithProgression
ENSG00000187837 HIST1H1C o--b
ENSG00000072571 HMMR o+-
ENSG00000152795 HNRPDL oo-
ENSG00000168172 HOOK3 o--b
ENSG00000144381 HSPD1 o--b
ENSG00000115541 HSPE1 o+-
ENSG00000116237 ICMT o--b
ENSG00000067829 IDH3G ---
ENSG00000104951 IL4I1 NonAssociatedWithProgression
ENSG00000129351 ILF3 -o-
ENSG00000086200 IPO11 o--a
ENSG00000198700 IPO9 o--b
ENSG00000136003 ISCU o+o
ENSG00000078747 ITCH o++b
ENSG00000119185 ITGB1BP1 NonAssociatedWithProgression
ENSG00000096968 JAK2 o++a
ENSG00000170852 KBTBD2 oo-
ENSG00000174943 KCTD13 o--a
ENSG00000198894 KIAA1737 o--a
ENSG00000131437 KIF3A oo-
ENSG00000170759 KIF5B NonAssociatedWithProgression
ENSG00000075945 KIFAP3 NonAssociatedWithProgression
ENSG00000151657 KIN o+o
ENSG00000114030 KPNA1 NonAssociatedWithProgression
ENSG00000167615 LENG8 o--a
ENSG00000005156 LIG3 NonAssociatedWithProgression
ENSG00000186001 LRCH3 o++a
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000175324 LSM1 o-o
ENSG00000204392 LSM2 --o
ENSG00000164109 MAD2L1 NonAssociatedWithProgression
ENSG00000179222 MAGED1 NonAssociatedWithProgression
ENSG00000102316 MAGED2 ---
ENSG00000126934 MAP2K2 o--a
ENSG00000076984 MAP2K7 ---
ENSG00000173327 MAP3K11 ---
ENSG00000104814 MAP4K1 NonAssociatedWithProgression
ENSG00000166484 MAPK7 o-o
ENSG00000119487 MAPKAP1 o--a
ENSG00000186868 MAPT o++a
ENSG00000125952 MAX NonAssociatedWithProgression
ENSG00000103495 MAZ o--a
ENSG00000071655 MBD3 o--a
ENSG00000122696 MCART1 o++a
ENSG00000104738 MCM4 o--a
ENSG00000187778 MCRS1 o--b
ENSG00000169057 MECP2 o--a
ENSG00000198408 MGEA5 o++b
ENSG00000101752 MIB1 NonAssociatedWithProgression
ENSG00000079277 MKNK1 oo+
ENSG00000076242 MLH1 o--b
ENSG00000164172 MOCS2 -+o
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000129255 MPDU1 o--b
ENSG00000072415 MPP5 NonAssociatedWithProgression
ENSG00000082515 MRPL22 +o+
ENSG00000185414 MRPL30 +o+
ENSG00000171421 MRPL36 ---
ENSG00000174100 MRPL45 o--a
ENSG00000204568 MRPS18B o--a
ENSG00000135972 MRPS9 o+o
ENSG00000173531 MST1 +o+
ENSG00000109919 MTCH2 o-o
ENSG00000105887 MTPN NonAssociatedWithProgression
ENSG00000213347 MXD3 o--a
ENSG00000136504 MYST2 NonAssociatedWithProgression
ENSG00000125814 NAPB o++a
ENSG00000134265 NAPG o-+
ENSG00000172915 NBEA -+o
ENSG00000136937 NCBP1 o+-
ENSG00000101079 NDRG3 --o
ENSG00000128609 NDUFA5 NonAssociatedWithProgression
ENSG00000119421 NDUFA8 oo+
ENSG00000196712 NF1 o+o
ENSG00000102908 NFAT5 o--b
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000149308 NPAT o-+
ENSG00000181163 NPM1 o--b
ENSG00000120798 NR2C1 NonAssociatedWithProgression
ENSG00000103274 NUBP1 o--b
ENSG00000196368 NUDT11 o+-
ENSG00000111581 NUP107 -+o
ENSG00000213024 NUP62 o--a
ENSG00000180304 OAZ2 o+o
ENSG00000122884 P4HA1 o--b
ENSG00000070756 PABPC1 o--b
ENSG00000120727 PAIP2 NonAssociatedWithProgression
ENSG00000164329 PAPD4 NonAssociatedWithProgression
ENSG00000162073 PAQR4 NonAssociatedWithProgression
ENSG00000114054 PCCB NonAssociatedWithProgression
ENSG00000132646 PCNA -o-
ENSG00000115539 PDCL3 NonAssociatedWithProgression
ENSG00000205268 PDE7A ---
ENSG00000196923 PDLIM7 -oo
ENSG00000113068 PFDN1 o-o
ENSG00000197121 PGAP1 NonAssociatedWithProgression
ENSG00000164040 PGRMC2 o--a
ENSG00000112511 PHF1 o--b
ENSG00000109118 PHF12 o--a
ENSG00000156873 PHKG2 o--b
ENSG00000151665 PIGF -+o
ENSG00000198355 PIM3 o--a
ENSG00000107679 PLEKHA1 +o+
ENSG00000142731 PLK4 o+-
ENSG00000106397 PLOD3 o--a
ENSG00000122512 PMS2 NonAssociatedWithProgression
ENSG00000014138 POLA2 o++b
ENSG00000181222 POLR2A ---
ENSG00000047315 POLR2B +oo
ENSG00000100142 POLR2F NonAssociatedWithProgression
ENSG00000163882 POLR2H o-o
ENSG00000130714 POMT1 o++b
ENSG00000172336 POP7 o--a
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000100614 PPM1A o--a
ENSG00000213639 PPP1CB +-o
ENSG00000204569 PPP1R10 o--b
ENSG00000058272 PPP1R12A o+o
ENSG00000077157 PPP1R12B -oo
ENSG00000158615 PPP1R15B +-o
ENSG00000113575 PPP2CA o--b
ENSG00000123131 PRDX4 o--a
ENSG00000138073 PREB o--a
ENSG00000253729 PRKDC o--b
ENSG00000117360 PRPF3 o--a
ENSG00000041357 PSMA4 -+o
ENSG00000087191 PSMC5 -+o
ENSG00000121390 PSPC1 o+o
ENSG00000187514 PTMA o--b
ENSG00000175354 PTPN2 NonAssociatedWithProgression
ENSG00000084733 RAB10 NonAssociatedWithProgression
ENSG00000099246 RAB18 o++b
ENSG00000174903 RAB1B o-o
ENSG00000111737 RAB35 o--a
ENSG00000127328 RAB3IP o++a
ENSG00000011454 RABGAP1 o--a
ENSG00000137955 RABGGTB NonAssociatedWithProgression
ENSG00000164754 RAD21 o--b
ENSG00000119318 RAD23B oo-
ENSG00000017797 RALBP1 --o
ENSG00000031823 RANBP3 NonAssociatedWithProgression
ENSG00000145715 RASA1 NonAssociatedWithProgression
ENSG00000068028 RASSF1 o--a
ENSG00000161847 RAVER1 ---
ENSG00000102054 RBBP7 o-o
ENSG00000101773 RBBP8 NonAssociatedWithProgression
ENSG00000244462 RBM12 o--b
ENSG00000239306 RBM14 o--a
ENSG00000121039 RDH10 NonAssociatedWithProgression
ENSG00000064490 RFXANK ---
ENSG00000133111 RFXAP NonAssociatedWithProgression
ENSG00000067560 RHOA o-o
ENSG00000158106 RHPN1 o--a
ENSG00000157450 RNF111 o++b
ENSG00000164068 RNF123 --o
ENSG00000163162 RNF149 o--b
ENSG00000103549 RNF40 o--a
ENSG00000112130 RNF8 NonAssociatedWithProgression
ENSG00000122406 RPL5 NonAssociatedWithProgression
ENSG00000147604 RPL7 NonAssociatedWithProgression
ENSG00000105193 RPS16 o--b
ENSG00000186468 RPS23 o-o
ENSG00000213741 RPS29 NonAssociatedWithProgression
ENSG00000144580 RQCD1 NonAssociatedWithProgression
ENSG00000148484 RSU1 -oo
ENSG00000137996 RTCD1 NonAssociatedWithProgression
ENSG00000133318 RTN3 o--a
ENSG00000111832 RWDD1 ---
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000142230 SAE1 o-o
ENSG00000160633 SAFB o--b
ENSG00000156671 SAMD8 o+o
ENSG00000150459 SAP18 o-o
ENSG00000075856 SART3 NonAssociatedWithProgression
ENSG00000126524 SBDS o+-
ENSG00000140497 SCAMP2 ---
ENSG00000116521 SCAMP3 o--a
ENSG00000054282 SDCCAG8 ---
ENSG00000073578 SDHA o-o
ENSG00000176986 SEC24C ---
ENSG00000079387 SENP1 o+-
ENSG00000138468 SENP7 o++b
ENSG00000120742 SERP1 --o
ENSG00000119335 SET o--b
ENSG00000168066 SF1 o-o
ENSG00000163069 SGCB NonAssociatedWithProgression
ENSG00000160691 SHC1 o--a
ENSG00000182199 SHMT2 o--a
ENSG00000092208 SIP1 NonAssociatedWithProgression
ENSG00000077463 SIRT6 o--b
ENSG00000177045 SIX5 NonAssociatedWithProgression
ENSG00000176087 SLC35A4 NonAssociatedWithProgression
ENSG00000124786 SLC35B3 o++a
ENSG00000116704 SLC35D1 o++b
ENSG00000112473 SLC39A7 o-o
ENSG00000168003 SLC3A2 +-o
ENSG00000099956 SMARCB1 ---
ENSG00000082014 SMARCD3 +oo
ENSG00000099940 SNAP29 o-+
ENSG00000197157 SND1 ---
ENSG00000125743 SNRPD2 o--a
ENSG00000128739 SNRPN o-o
ENSG00000180008 SOCS4 +o+
ENSG00000159140 SON NonAssociatedWithProgression
ENSG00000171763 SPATA5L1 NonAssociatedWithProgression
ENSG00000121067 SPOP o--b
ENSG00000187678 SPRY4 +-o
ENSG00000096063 SRPK1 o--a
ENSG00000167720 SRR ---
ENSG00000133226 SRRM1 o--b
ENSG00000167978 SRRM2 o--a
ENSG00000141298 SSH2 NonAssociatedWithProgression
ENSG00000180879 SSR4 ---
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000066923 STAG3 o--b
ENSG00000214530 STARD10 ---
ENSG00000109689 STIM2 --o
ENSG00000112079 STK38 o--b
ENSG00000117758 STX12 NonAssociatedWithProgression
ENSG00000170310 STX8 NonAssociatedWithProgression
ENSG00000107882 SUFU o--b
ENSG00000125755 SYMPK ---
ENSG00000178913 TAF7 o--b
ENSG00000121749 TBC1D15 o+o
ENSG00000131374 TBC1D5 NonAssociatedWithProgression
ENSG00000145022 TCTA o--a
ENSG00000139372 TDG NonAssociatedWithProgression
ENSG00000042088 TDP1 o--a
ENSG00000168286 THAP11 o--b
ENSG00000177683 THAP5 o+o
ENSG00000116001 TIA1 -o-
ENSG00000151923 TIAL1 o+o
ENSG00000164296 TIGD6 NonAssociatedWithProgression
ENSG00000112697 TMEM30A NonAssociatedWithProgression
ENSG00000144747 TMF1 o+o
ENSG00000107854 TNKS2 o-+
ENSG00000078902 TOLLIP o-o
ENSG00000196683 TOMM7 NonAssociatedWithProgression
ENSG00000198900 TOP1 o+o
ENSG00000197579 TOPORS -o-
ENSG00000204104 TRAF3IP1 NonAssociatedWithProgression
ENSG00000170043 TRAPPC1 o--a
ENSG00000054116 TRAPPC3 o++a
ENSG00000130726 TRIM28 o--a
ENSG00000108395 TRIM37 o+-
ENSG00000204599 TRIM39 oo-
ENSG00000135951 TSGA10 o++a
ENSG00000135912 TTLL4 o--b
ENSG00000131462 TUBG1 --o
ENSG00000037042 TUBG2 o-+
ENSG00000078246 TULP3 o--a
ENSG00000115514 TXNDC9 o+o
ENSG00000063244 U2AF2 ---
ENSG00000221983 UBA52 o--a
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000130725 UBE2M o--a
ENSG00000110344 UBE4A NonAssociatedWithProgression
ENSG00000118939 UCHL3 NonAssociatedWithProgression
ENSG00000151461 UPF2 NonAssociatedWithProgression
ENSG00000010256 UQCRC1 o--a
ENSG00000188690 UROS o--a
ENSG00000105698 USF2 ---
ENSG00000115652 UXS1 NonAssociatedWithProgression
ENSG00000108828 VAT1 o--b
ENSG00000129003 VPS13C NonAssociatedWithProgression
ENSG00000115561 VPS24 NonAssociatedWithProgression
ENSG00000095787 WAC -o-
ENSG00000139668 WDFY2 o++b
ENSG00000198554 WDHD1 ---
ENSG00000138442 WDR12 o++b
ENSG00000140153 WDR20 +oo
ENSG00000142784 WDTC1 -o-
ENSG00000182093 WRB o++b
ENSG00000124571 XPO5 o+o
ENSG00000073050 XRCC1 ---
ENSG00000174282 ZBTB4 o-+
ENSG00000168795 ZBTB5 NonAssociatedWithProgression
ENSG00000147905 ZCCHC7 o--b
ENSG00000078487 ZCWPW1 -oo
ENSG00000160446 ZDHHC12 ---
ENSG00000186660 ZFP91 +-o
ENSG00000039319 ZFYVE16 +o+
ENSG00000162702 ZNF281 o+o
ENSG00000161298 ZNF382 o+-
ENSG00000124444 ZNF576 NonAssociatedWithProgression