PEACHi
GeneSet STRUCTURAL_MOLECULE_ACTIVITY (GO_-_Molecular_Function.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.3 0.03238 94.0 25.0 13.35
DownRegulated -4.8 6.8E-4 94.0 74.0 55.51
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000075624 ACTB o--b
ENSG00000148700 ADD3 o--b
ENSG00000135046 ANXA1 o+-
ENSG00000130429 ARPC1B -+o
ENSG00000163466 ARPC2 -o-
ENSG00000111229 ARPC3 NonAssociatedWithProgression
ENSG00000241553 ARPC4 o--b
ENSG00000162704 ARPC5 o--b
ENSG00000103429 BFAR o++b
ENSG00000151746 BICD1 NonAssociatedWithProgression
ENSG00000108091 CCDC6 o+-
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000158985 CDC42SE2 o-o
ENSG00000102879 CORO1A o--a
ENSG00000058453 CROCC --o
ENSG00000096696 DSP NonAssociatedWithProgression
ENSG00000151914 DST -+o
ENSG00000172638 EFEMP2 NonAssociatedWithProgression
ENSG00000159023 EPB41 -o-
ENSG00000095203 EPB41L4B -oo
ENSG00000149806 FAU o-o
ENSG00000163520 FBLN2 NonAssociatedWithProgression
ENSG00000146021 KLHL3 o++b
ENSG00000131899 LLGL1 o--a
ENSG00000113368 LMNB1 o--b
ENSG00000172005 MAL o--a
ENSG00000047849 MAP4 o-+
ENSG00000008735 MAPK8IP2 o--a
ENSG00000186868 MAPT o++a
ENSG00000015479 MATR3 -o-
ENSG00000197965 MPZL1 o+o
ENSG00000159111 MRPL10 o--a
ENSG00000183093 MRPL12 ---
ENSG00000214026 MRPL23 ---
ENSG00000182154 MRPL41 ---
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000162910 MRPL55 o--a
ENSG00000128626 MRPS12 o--a
ENSG00000120333 MRPS14 +o+
ENSG00000175110 MRPS22 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000125445 MRPS7 o--b
ENSG00000147065 MSN NonAssociatedWithProgression
ENSG00000092841 MYL6 o-o
ENSG00000036448 MYOM2 NonAssociatedWithProgression
ENSG00000137497 NUMA1 o--b
ENSG00000136811 ODF2 o--b
ENSG00000120756 PLS1 o++a
ENSG00000142676 RPL11 o--b
ENSG00000167526 RPL13 o--b
ENSG00000142541 RPL13A NonAssociatedWithProgression
ENSG00000188846 RPL14 o--a
ENSG00000174748 RPL15 o--a
ENSG00000105640 RPL18A o-o
ENSG00000108298 RPL19 o-o
ENSG00000122026 RPL21 o--a
ENSG00000116251 RPL22 +-o
ENSG00000198242 RPL23A o--a
ENSG00000114391 RPL24 o--b
ENSG00000161970 RPL26 o-o
ENSG00000131469 RPL27 NonAssociatedWithProgression
ENSG00000166441 RPL27A o--a
ENSG00000108107 RPL28 o--b
ENSG00000162244 RPL29 o--a
ENSG00000100316 RPL3 -o-
ENSG00000156482 RPL30 o++b
ENSG00000071082 RPL31 o-+
ENSG00000109475 RPL34 NonAssociatedWithProgression
ENSG00000136942 RPL35 o--b
ENSG00000145592 RPL37 NonAssociatedWithProgression
ENSG00000198918 RPL39 o-+
ENSG00000174444 RPL4 o--b
ENSG00000122406 RPL5 NonAssociatedWithProgression
ENSG00000089009 RPL6 o--b
ENSG00000147604 RPL7 NonAssociatedWithProgression
ENSG00000148303 RPL7A -o-
ENSG00000161016 RPL8 ---
ENSG00000163682 RPL9 NonAssociatedWithProgression
ENSG00000089157 RPLP0 o--b
ENSG00000137818 RPLP1 NonAssociatedWithProgression
ENSG00000177600 RPLP2 NonAssociatedWithProgression
ENSG00000124614 RPS10 NonAssociatedWithProgression
ENSG00000142534 RPS11 o--a
ENSG00000112306 RPS12 o--a
ENSG00000110700 RPS13 NonAssociatedWithProgression
ENSG00000164587 RPS14 -o-
ENSG00000115268 RPS15 NonAssociatedWithProgression
ENSG00000134419 RPS15A o+-
ENSG00000105193 RPS16 o--b
ENSG00000231500 RPS18 o-o
ENSG00000105372 RPS19 -o-
ENSG00000140988 RPS2 o--a
ENSG00000008988 RPS20 o--a
ENSG00000186468 RPS23 o-o
ENSG00000138326 RPS24 NonAssociatedWithProgression
ENSG00000197728 RPS26 NonAssociatedWithProgression
ENSG00000177954 RPS27 o-o
ENSG00000233927 RPS28 o-o
ENSG00000213741 RPS29 NonAssociatedWithProgression
ENSG00000149273 RPS3 o--b
ENSG00000145425 RPS3A o-o
ENSG00000198034 RPS4X NonAssociatedWithProgression
ENSG00000129824 RPS4Y1 o--a
ENSG00000083845 RPS5 o--a
ENSG00000137154 RPS6 o--a
ENSG00000171863 RPS7 o--a
ENSG00000142937 RPS8 NonAssociatedWithProgression
ENSG00000170889 RPS9 o--b
ENSG00000184702 SEPT5 NonAssociatedWithProgression
ENSG00000122545 SEPT7 NonAssociatedWithProgression
ENSG00000183963 SMTN ---
ENSG00000197694 SPTAN1 NonAssociatedWithProgression
ENSG00000115306 SPTBN1 oo-
ENSG00000160460 SPTBN4 NonAssociatedWithProgression
ENSG00000090372 STRN4 o--b
ENSG00000058804 TMEM48 NonAssociatedWithProgression
ENSG00000140416 TPM1 oo+
ENSG00000198467 TPM2 ---
ENSG00000127589 TUBB4Q o--a
ENSG00000074935 TUBE1 o+o
ENSG00000131462 TUBG1 --o
ENSG00000037042 TUBG2 o-+
ENSG00000136059 VILL o--a
ENSG00000026025 VIM o--b