PEACHi
GeneSet V$E2F_03 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.4 0.04965 88.0 24.0 12.5
DownRegulated -3.3 0.03485 88.0 66.0 51.97
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000004455 AK2 o--a
ENSG00000131503 ANKHD1 o--b
ENSG00000140350 ANP32A o--a
ENSG00000143401 ANP32E oo-
ENSG00000221838 AP4M1 NonAssociatedWithProgression
ENSG00000134287 ARF3 o--a
ENSG00000032219 ARID4A o-+
ENSG00000143970 ASXL2 o--b
ENSG00000156802 ATAD2 NonAssociatedWithProgression
ENSG00000107669 ATE1 -+o
ENSG00000100554 ATP6V1D NonAssociatedWithProgression
ENSG00000158321 AUTS2 o++b
ENSG00000100916 BRMS1L o--b
ENSG00000197771 C10orf119 o+-
ENSG00000164970 C9orf25 NonAssociatedWithProgression
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000082258 CCNT2 o-o
ENSG00000164045 CDC25A o--b
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000144354 CDCA7 NonAssociatedWithProgression
ENSG00000124762 CDKN1A oo-
ENSG00000125817 CENPB o--b
ENSG00000102974 CTCF o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000204209 DAXX o--b
ENSG00000156136 DCK ---
ENSG00000198924 DCLRE1A o-o
ENSG00000134574 DDB2 o--a
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000119689 DLST o--a
ENSG00000007923 DNAJC11 o--a
ENSG00000213551 DNAJC9 NonAssociatedWithProgression
ENSG00000130816 DNMT1 o-o
ENSG00000092964 DPYSL2 NonAssociatedWithProgression
ENSG00000101412 E2F1 o--b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000165891 E2F7 NonAssociatedWithProgression
ENSG00000171570 EGLN2 NonAssociatedWithProgression
ENSG00000134001 EIF2S1 o--a
ENSG00000110321 EIF4G2 o+-
ENSG00000132507 EIF5A o--a
ENSG00000154928 EPHB1 -oo
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000108306 FBXL20 NonAssociatedWithProgression
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000096060 FKBP5 o--b
ENSG00000076258 FMO4 o++a
ENSG00000089280 FUS o+-
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000164032 H2AFZ o-o
ENSG00000124575 HIST1H1D ---
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000117318 ID3 ---
ENSG00000071243 ING3 o--b
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000151079 KCNA6 NonAssociatedWithProgression
ENSG00000121210 KIAA0922 o-o
ENSG00000102554 KLF5 o-+
ENSG00000124702 KLHDC3 o--a
ENSG00000184445 KNTC1 o+o
ENSG00000105486 LIG1 o--a
ENSG00000146963 LUC7L2 o--a
ENSG00000168906 MAT2A ---
ENSG00000103495 MAZ o--a
ENSG00000073111 MCM2 o--a
ENSG00000104738 MCM4 o--a
ENSG00000076003 MCM6 o--a
ENSG00000166508 MCM7 o--b
ENSG00000112110 MRPL18 o--a
ENSG00000213347 MXD3 o--a
ENSG00000136997 MYC o--b
ENSG00000132780 NASP o--a
ENSG00000196865 NHLRC2 NonAssociatedWithProgression
ENSG00000124789 NUP153 o+-
ENSG00000102898 NUTF2 --o
ENSG00000162073 PAQR4 NonAssociatedWithProgression
ENSG00000043143 PHF15 o--b
ENSG00000137193 PIM1 o--b
ENSG00000127564 PKMYT1 +-o
ENSG00000118495 PLAGL1 NonAssociatedWithProgression
ENSG00000142731 PLK4 o+-
ENSG00000014138 POLA2 o++b
ENSG00000062822 POLD1 o--a
ENSG00000108819 PPP1R9B -+o
ENSG00000148840 PPRC1 o--b
ENSG00000198056 PRIM1 ---
ENSG00000130175 PRKCSH o--b
ENSG00000253729 PRKDC o--b
ENSG00000147224 PRPS1 o--a
ENSG00000187514 PTMA o--b
ENSG00000185236 RAB11B ---
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000162521 RBBP4 NonAssociatedWithProgression
ENSG00000080839 RBL1 +o+
ENSG00000167771 RCOR2 NonAssociatedWithProgression
ENSG00000035928 RFC1 o--b
ENSG00000117748 RPA2 oo-
ENSG00000108107 RPL28 o--b
ENSG00000008988 RPS20 o--a
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000170145 SIK2 o--a
ENSG00000163950 SLBP NonAssociatedWithProgression
ENSG00000147100 SLC16A2 o++a
ENSG00000108528 SLC25A11 ---
ENSG00000157106 SMG1 o+o
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000117632 STMN1 o--b
ENSG00000101945 SUV39H1 o--a
ENSG00000120438 TCP1 -o-
ENSG00000156299 TIAM1 +o+
ENSG00000140332 TLE3 ---
ENSG00000198900 TOP1 o+o
ENSG00000163781 TOPBP1 o+o
ENSG00000070010 UFD1L o+-
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000147548 WHSC1L1 o--b
ENSG00000033030 ZCCHC8 +oo
ENSG00000165244 ZNF367 NonAssociatedWithProgression