PEACHi
GeneSet V$NRF2_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -4.3 0.01708 97.0 28.0 13.78
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000094914 AAAS o--a
ENSG00000100813 ACIN1 ---
ENSG00000134575 ACP2 NonAssociatedWithProgression
ENSG00000138071 ACTR2 o+o
ENSG00000162688 AGL -+o
ENSG00000131016 AKAP12 NonAssociatedWithProgression
ENSG00000204673 AKT1S1 ---
ENSG00000072958 AP1M1 o--b
ENSG00000134287 ARF3 o--a
ENSG00000175220 ARHGAP1 NonAssociatedWithProgression
ENSG00000089820 ARHGAP4 ---
ENSG00000102606 ARHGEF7 NonAssociatedWithProgression
ENSG00000162704 ARPC5 o--b
ENSG00000100554 ATP6V1D NonAssociatedWithProgression
ENSG00000149541 B3GAT3 o--a
ENSG00000198563 BAT1 o--a
ENSG00000204438 BAT4 o--a
ENSG00000198604 BAZ1A NonAssociatedWithProgression
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000171552 BCL2L1 ---
ENSG00000147439 BIN3 o--b
ENSG00000095564 BTAF1 NonAssociatedWithProgression
ENSG00000165511 C10orf25 o-+
ENSG00000115649 C2orf24 o--b
ENSG00000131236 CAP1 o--a
ENSG00000141570 CBX8 ---
ENSG00000169217 CD2BP2 o--a
ENSG00000085872 CHERP o-o
ENSG00000213341 CHUK NonAssociatedWithProgression
ENSG00000173207 CKS1B NonAssociatedWithProgression
ENSG00000014919 COX15 NonAssociatedWithProgression
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000157184 CPT2 o-+
ENSG00000204435 CSNK2B o--a
ENSG00000119929 CUTC o+o
ENSG00000204209 DAXX o--b
ENSG00000183283 DAZAP2 o-o
ENSG00000175197 DDIT3 +-o
ENSG00000244038 DDOST o--a
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000107625 DDX50 NonAssociatedWithProgression
ENSG00000067596 DHX8 o--a
ENSG00000184047 DIABLO o--a
ENSG00000119689 DLST o--a
ENSG00000136770 DNAJC1 NonAssociatedWithProgression
ENSG00000168259 DNAJC7 ---
ENSG00000130816 DNMT1 o-o
ENSG00000074603 DPP8 o--b
ENSG00000117505 DR1 o--a
ENSG00000091073 DTX2 ---
ENSG00000205250 E2F4 ---
ENSG00000119718 EIF2B2 o--a
ENSG00000134001 EIF2S1 o--a
ENSG00000132507 EIF5A o--a
ENSG00000158711 ELK4 NonAssociatedWithProgression
ENSG00000063245 EPN1 ---
ENSG00000167196 FBXO22 NonAssociatedWithProgression
ENSG00000110429 FBXO3 o+o
ENSG00000111790 FGFR1OP2 NonAssociatedWithProgression
ENSG00000172500 FIBP --o
ENSG00000102081 FMR1 o+-
ENSG00000166225 FRS2 NonAssociatedWithProgression
ENSG00000163820 FYCO1 NonAssociatedWithProgression
ENSG00000114353 GNAI2 --o
ENSG00000065135 GNAI3 NonAssociatedWithProgression
ENSG00000103342 GSPT1 NonAssociatedWithProgression
ENSG00000140307 GTF2A2 NonAssociatedWithProgression
ENSG00000077235 GTF3C1 o--b
ENSG00000148634 HERC4 o++a
ENSG00000140382 HMG20A o++b
ENSG00000120694 HSPH1 o+-
ENSG00000111653 ING4 o+-
ENSG00000125629 INSIG2 o-+
ENSG00000140575 IQGAP1 NonAssociatedWithProgression
ENSG00000135916 ITM2C NonAssociatedWithProgression
ENSG00000069424 KCNAB2 ---
ENSG00000137269 LRRC1 NonAssociatedWithProgression
ENSG00000162441 LZIC NonAssociatedWithProgression
ENSG00000075413 MARK3 NonAssociatedWithProgression
ENSG00000159479 MED8 o--b
ENSG00000114686 MRPL3 NonAssociatedWithProgression
ENSG00000188786 MTF1 o+-
ENSG00000087053 MTMR2 o+o
ENSG00000108389 MTMR4 NonAssociatedWithProgression
ENSG00000105887 MTPN NonAssociatedWithProgression
ENSG00000196712 NF1 o+o
ENSG00000168256 NKIRAS2 o--a
ENSG00000131408 NR1H2 o--a
ENSG00000213281 NRAS o--b
ENSG00000165609 NUDT5 --o
ENSG00000156531 PHF6 o++a
ENSG00000102893 PHKB ---
ENSG00000106397 PLOD3 o--a
ENSG00000126432 PRDX5 o--a
ENSG00000142875 PRKACB o--b
ENSG00000130175 PRKCSH o--b
ENSG00000197170 PSMD12 oo-
ENSG00000185627 PSMD13 o--b
ENSG00000174903 RAB1B o-o
ENSG00000123728 RAP2C o++b
ENSG00000171700 RGS19 -+o
ENSG00000205937 RNPS1 NonAssociatedWithProgression
ENSG00000131469 RPL27 NonAssociatedWithProgression
ENSG00000162244 RPL29 o--a
ENSG00000109475 RPL34 NonAssociatedWithProgression
ENSG00000145592 RPL37 NonAssociatedWithProgression
ENSG00000089009 RPL6 o--b
ENSG00000124614 RPS10 NonAssociatedWithProgression
ENSG00000231500 RPS18 o-o
ENSG00000083845 RPS5 o--a
ENSG00000126458 RRAS NonAssociatedWithProgression
ENSG00000140497 SCAMP2 ---
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000176986 SEC24C ---
ENSG00000079387 SENP1 o+-
ENSG00000143368 SF3B4 o--b
ENSG00000160691 SHC1 o--a
ENSG00000142082 SIRT3 +o+
ENSG00000101109 STK4 NonAssociatedWithProgression
ENSG00000124659 TBCC o--a
ENSG00000081059 TCF7 o+-
ENSG00000164296 TIGD6 NonAssociatedWithProgression
ENSG00000150779 TIMM8B --o
ENSG00000067182 TNFRSF1A NonAssociatedWithProgression
ENSG00000107854 TNKS2 o-+
ENSG00000100216 TOMM22 o--b
ENSG00000130204 TOMM40 o--a
ENSG00000154174 TOMM70A o+-
ENSG00000178952 TUFM o--a
ENSG00000177889 UBE2N o--a
ENSG00000143222 UFC1 NonAssociatedWithProgression
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000223501 VPS52 ---
ENSG00000198373 WWP2 +-o
ENSG00000171448 ZBTB26 o++a
ENSG00000156599 ZDHHC5 o--b
ENSG00000096654 ZNF184 +o+
ENSG00000165512 ZNF22 NonAssociatedWithProgression
ENSG00000167377 ZNF23 o+o
ENSG00000126746 ZNF384 o+o
ENSG00000175213 ZNF408 o--a