PEACHi
GeneSet V$PPAR_DR1_Q2 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -3.5 0.04626 83.0 21.0 10.16
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000072778 ACADVL o--b
ENSG00000018510 AGPS ---
ENSG00000131480 AOC2 o+-
ENSG00000100280 AP1B1 o--b
ENSG00000124198 ARFGEF2 o+o
ENSG00000107863 ARHGAP21 +o+
ENSG00000102606 ARHGEF7 NonAssociatedWithProgression
ENSG00000032219 ARID4A o-+
ENSG00000171456 ASXL1 o--b
ENSG00000070961 ATP2B1 +-o
ENSG00000083123 BCKDHB o++a
ENSG00000147439 BIN3 o--b
ENSG00000158019 BRE o--a
ENSG00000196821 C6orf106 o--a
ENSG00000203993 C9orf37 o-o
ENSG00000171365 CLCN5 -+o
ENSG00000106404 CLDN15 o--b
ENSG00000204291 COL15A1 +oo
ENSG00000101266 CSNK2A1 o--a
ENSG00000204843 DCTN1 ---
ENSG00000175203 DCTN2 --o
ENSG00000132535 DLG4 ---
ENSG00000069345 DNAJA2 o-o
ENSG00000119772 DNMT3A o-o
ENSG00000114942 EEF1B2 -o-
ENSG00000114867 EIF4G1 ---
ENSG00000173153 ESRRA ---
ENSG00000131187 F12 --o
ENSG00000184922 FMNL1 NonAssociatedWithProgression
ENSG00000034713 GABARAPL2 -+o
ENSG00000107862 GBF1 o-o
ENSG00000131979 GCH1 +o+
ENSG00000139433 GLTP NonAssociatedWithProgression
ENSG00000144674 GOLGA4 NonAssociatedWithProgression
ENSG00000109519 GRPEL1 o--b
ENSG00000068024 HDAC4 o--b
ENSG00000120093 HOXB3 oo+
ENSG00000204228 HSD17B8 o--b
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000171105 INSR +o+
ENSG00000005893 LAMP2 o-+
ENSG00000173621 LRFN4 ---
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000034152 MAP2K3 ---
ENSG00000173327 MAP3K11 ---
ENSG00000072518 MARK2 ---
ENSG00000159479 MED8 o--b
ENSG00000133816 MICAL2 o++a
ENSG00000108292 MLLT6 o--a
ENSG00000108960 MMD +o+
ENSG00000155363 MOV10 ---
ENSG00000169288 MRPL1 o-o
ENSG00000174547 MRPL11 ---
ENSG00000133026 MYH10 o--a
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000023228 NDUFS1 o+o
ENSG00000111859 NEDD9 NonAssociatedWithProgression
ENSG00000173848 NET1 oo-
ENSG00000178403 NEUROG2 NonAssociatedWithProgression
ENSG00000116044 NFE2L2 o--b
ENSG00000120798 NR2C1 NonAssociatedWithProgression
ENSG00000160113 NR2F6 NonAssociatedWithProgression
ENSG00000111845 PAK1IP1 NonAssociatedWithProgression
ENSG00000130669 PAK4 o--b
ENSG00000007372 PAX6 NonAssociatedWithProgression
ENSG00000090097 PCBP4 o-o
ENSG00000108518 PFN1 o-o
ENSG00000181929 PRKAG1 ---
ENSG00000111344 RASAL1 --o
ENSG00000122257 RBBP6 ---
ENSG00000171174 RBKS -oo
ENSG00000153250 RBMS1 o++b
ENSG00000173653 RCE1 o--b
ENSG00000120158 RCL1 NonAssociatedWithProgression
ENSG00000084093 REST NonAssociatedWithProgression
ENSG00000134318 ROCK2 +o+
ENSG00000131469 RPL27 NonAssociatedWithProgression
ENSG00000144580 RQCD1 NonAssociatedWithProgression
ENSG00000125844 RRBP1 ---
ENSG00000114993 RTKN NonAssociatedWithProgression
ENSG00000115310 RTN4 +oo
ENSG00000182568 SATB1 o--a
ENSG00000163156 SCNM1 o--a
ENSG00000176986 SEC24C ---
ENSG00000198736 SEPX1 NonAssociatedWithProgression
ENSG00000213901 SLC23A3 ---
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000005022 SLC25A5 NonAssociatedWithProgression
ENSG00000183963 SMTN ---
ENSG00000135632 SMYD5 ---
ENSG00000187678 SPRY4 +-o
ENSG00000141380 SS18 o++a
ENSG00000141298 SSH2 NonAssociatedWithProgression
ENSG00000126561 STAT5A o-o
ENSG00000165283 STOML2 ---
ENSG00000064313 TAF2 o-o
ENSG00000167074 TEF ---
ENSG00000241697 TMEFF1 o+o
ENSG00000006327 TNFRSF12A NonAssociatedWithProgression
ENSG00000154174 TOMM70A o+-
ENSG00000141510 TP53 o--a
ENSG00000186815 TPCN1 --o
ENSG00000198467 TPM2 ---
ENSG00000107341 UBE2R2 -o-
ENSG00000152484 USP12 o--b
ENSG00000198298 ZNF485 +oo