PEACHi
GeneSet chr17p13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -5.7 2.1E-4 81.0 25.0 9.91
AllGenesAssociatedWithProgression -3.9 0.00521 92.0 81.0 67.03
DownRegulated -4.4 0.00145 81.0 64.0 47.83
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000159842 ABR oo+
ENSG00000072778 ACADVL o--b
ENSG00000141480 ARRB2 ---
ENSG00000074370 ATP2A3 o--b
ENSG00000178999 AURKB o--b
ENSG00000178977 C17orf44 NonAssociatedWithProgression
ENSG00000170222 C17orf48 o-+
ENSG00000161939 C17orf49 o--a
ENSG00000196544 C17orf59 ---
ENSG00000170291 C17orf81 o--b
ENSG00000108561 C1QBP NonAssociatedWithProgression
ENSG00000004660 CAMKK1 ---
ENSG00000108509 CAMTA2 --o
ENSG00000170004 CHD3 o--a
ENSG00000170037 CNTROB o-o
ENSG00000167193 CRK o+o
ENSG00000040531 CTNS --o
ENSG00000182224 CYB5D1 ---
ENSG00000167740 CYB5D2 +o+
ENSG00000072849 DERL2 o-o
ENSG00000005100 DHX33 o--a
ENSG00000132535 DLG4 ---
ENSG00000108963 DPH1 NonAssociatedWithProgression
ENSG00000108591 DRG2 o--b
ENSG00000004975 DVL2 NonAssociatedWithProgression
ENSG00000161960 EIF4A1 -o-
ENSG00000132507 EIF5A o--a
ENSG00000167695 FAM57A oo+
ENSG00000007237 GAS7 ---
ENSG00000132522 GPS2 ---
ENSG00000179111 HES7 NonAssociatedWithProgression
ENSG00000083457 ITGAE o++a
ENSG00000170049 KCNAB3 ---
ENSG00000132361 KIAA0664 ---
ENSG00000198920 KIAA0753 o--b
ENSG00000183011 LSMD1 o-+
ENSG00000127804 METT10D o--b
ENSG00000141503 MINK1 o--b
ENSG00000167842 MIS12 o+o
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000129255 MPDU1 o--b
ENSG00000132382 MYBBP1A o--b
ENSG00000133026 MYH10 o--a
ENSG00000109063 MYH3 NonAssociatedWithProgression
ENSG00000197879 MYO1C ---
ENSG00000166579 NDEL1 o++b
ENSG00000169992 NLGN2 o-o
ENSG00000065320 NTN1 o++a
ENSG00000108559 NUP88 NonAssociatedWithProgression
ENSG00000167693 NXN ---
ENSG00000108405 P2RX1 NonAssociatedWithProgression
ENSG00000083454 P2RX5 o--b
ENSG00000007168 PAFAH1B1 o+-
ENSG00000141456 PELP1 o--a
ENSG00000179094 PER1 ---
ENSG00000178921 PFAS ---
ENSG00000108518 PFN1 o-o
ENSG00000040633 PHF23 --o
ENSG00000087111 PIGS o-o
ENSG00000174238 PITPNA o--a
ENSG00000187838 PLSCR3 o--a
ENSG00000181222 POLR2A ---
ENSG00000174231 PRPF8 o--b
ENSG00000142507 PSMB6 o-o
ENSG00000029725 RABEP1 NonAssociatedWithProgression
ENSG00000167705 RILP oo+
ENSG00000171861 RNMTL1 ---
ENSG00000129197 RPAIN o+o
ENSG00000181031 RPH3AL ---
ENSG00000161970 RPL26 o-o
ENSG00000161956 SENP3 o--b
ENSG00000132386 SERPINF1 ---
ENSG00000108528 SLC25A11 ---
ENSG00000125434 SLC25A35 ---
ENSG00000070366 SMG6 ---
ENSG00000186532 SMYD4 o--b
ENSG00000091640 SPAG7 o-o
ENSG00000167720 SRR ---
ENSG00000213977 TAX1BP3 ---
ENSG00000181284 TMEM102 ---
ENSG00000179029 TMEM107 o--b
ENSG00000127774 TMEM93 oo+
ENSG00000141510 TP53 o--a
ENSG00000170043 TRAPPC1 o--a
ENSG00000196689 TRPV1 o++a
ENSG00000167721 TSR1 o--b
ENSG00000184811 TUSC5 -+o
ENSG00000220205 VAMP2 o--b
ENSG00000167716 WDR81 ---
ENSG00000108953 YWHAE NonAssociatedWithProgression
ENSG00000174282 ZBTB4 o-+
ENSG00000074755 ZZEF1 ---